DreEX0048105 @ danRer10
Exon Skipping
Gene
ENSDARG00000079478 | mvb12bb
Description
multivesicular body subunit 12Bb [Source:ZFIN;Acc:ZDB-GENE-080414-2]
Coordinates
chr8:33421394-33468562:-
Coord C1 exon
chr8:33468471-33468562
Coord A exon
chr8:33423198-33423256
Coord C2 exon
chr8:33421394-33421453
Length
59 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTGTTTTTTCAGCTA
3' ss Score
9.94
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACAAGCCCCAAAGTCTCCGGTCTCTAGTCCTACTAAAAAGAACATTGTCAAGCCAGATTATGACGAAATCTACAACATCTACACCAAATCAG
Seq A exon
CTATGGATGATATTCCTTTTATGGTCTCCCAAAGGCCTGCCTCCCAGAGCAAATATGAT
Seq C2 exon
ATAGAACCACTTCCCATCTTGAATATTTCCATCAAATCACCACAGGAGATTGAGGAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079478_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.1=100)
A:
PF102404=DUF2464=FE(7.7=100)
C2:
PF102404=DUF2464=FE(8.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAAAGTCTCCGGTCTCTA
R:
TCCTCCTCAATCTCCTGTGGT
Band lengths:
146-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]