MmuEX0017908 @ mm9
Exon Skipping
Gene
ENSMUSG00000038740 | Fam125b
Description
family with sequence similarity 125, member B [Source:MGI Symbol;Acc:MGI:1919793]
Coordinates
chr2:33585473-33658359:-
Coord C1 exon
chr2:33658265-33658359
Coord A exon
chr2:33610510-33610565
Coord C2 exon
chr2:33585473-33589051
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCTCCTCTCTTCTCTTGCAGCAA
3' ss Score
13.16
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCACATCTCCCTAACACTACCGGCTACCTTCCGGGGCAGAAACAACACCAGCACAGACTATGAGTACCAGCTCTCCAATCTATATGCCATATCAG
Seq A exon
CAATGGATGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCCTGCATTCCAGAAAGT
Seq C2 exon
TACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGACTCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAATCCTGAGGAGCCCACAGCCTCCTGGGGGAGAAGACATCTCCTACCCGGTGCCCAGACTACTGATGGGGTGGCTGGGGTGAGAGTCACTCCCTCCCTCACCTGCCCGTTCTGCTTGCCCTGCTCACTGGCCACGAGACTCTGGGCAGCTGCTTGGTCATGTGTGGTCATCAGCTCGCCCGCTGAGACTTCCCTGCCTCCCTGGGACCGTTGTTCATAATTGTGACTAATGTATGTGCTGTTAGTGACCAGAGGCTCCTGTGTGATGACCACTTACCCCGCCAAGAAAGAAAACTCCTTCCTTACCTGGACTCACCCATGAGGGGCCCAGGCACACACTCCAGCCGCCCAGTGACACCCACTGGCTCCCCTCAACTGACCGTCACCTACCACAGAAATCCCACAAAGCCACTAGCTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038740_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.030 A=0.000 C2=0.551
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=PD(2.8=24.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAACAACACCAGCACAG
R:
CTCAGGATTGGGGGATCTGCT
Band lengths:
148-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: