GgaEX6015660 @ galGal4
Exon Skipping
Gene
ENSGALG00000000950 | MVB12B
Description
multivesicular body subunit 12B [Source:RefSeq peptide;Acc:NP_001025848]
Coordinates
chr17:9988603-10005351:+
Coord C1 exon
chr17:9988603-9988700
Coord A exon
chr17:10003535-10003590
Coord C2 exon
chr17:10005292-10005351
Length
56 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTTTGTCCCTTACAGCAA
3' ss Score
11.03
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCATATCTCGCTGACACTTCCTGCTAGCTTTCGAGGCAAAAGTCACAGCAGCCGCCTGGATTTGGAGCACCAGCACTCAAACCTGTATGCCATATCAG
Seq A exon
CAATGGATGGAGTGCCTTTCATGATCTCAGAGAAGTTTGCCTGTGCTCCTGAAGGG
Seq C2 exon
ATGCAGCCAATTGATCTCTTGGGCATCACAATCAAAACCCTTGCAGAAATTGAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950-'20-24,'20-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(13.1=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCTGACACTTCCTGCTA
R:
AGGGTTTTGATTGTGATGCCCA
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]