HsaEX0023905 @ hg19
Exon Skipping
Gene
ENSG00000196814 | FAM125B
Description
family with sequence similarity 125, member B [Source:HGNC Symbol;Acc:23368]
Coordinates
chr9:129184133-129246311:+
Coord C1 exon
chr9:129184133-129184227
Coord A exon
chr9:129243648-129243703
Coord C2 exon
chr9:129246252-129246311
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTTCTTTTGCAGCAA
3' ss Score
12.12
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
GCACATCTCCCTAACACTTCCTGCCACCTTCCGAGGCAGGAACAGCACCCGGACGGACTACGAGTACCAGCACTCCAATTTGTATGCCATATCAG
Seq A exon
CAATGGATGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCTTGTGTTCCAGAAAGT
Seq C2 exon
ATGCAGCCCTTTGATCTCCTGGGAATCACCATCAAATCTCTAGCAGAAATCGAAAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196814-'14-17,'14-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(12.7=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCCCTAACACTTCCTGCCA
R:
AGAGATTTGATGGTGATTCCCAGG
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)