GgaEX6015660 @ galGal3
Exon Skipping
Gene
ENSGALG00000000950 | FAM125B
Description
NA
Coordinates
chr17:10715131-10731879:+
Coord C1 exon
chr17:10715131-10715228
Coord A exon
chr17:10730063-10730118
Coord C2 exon
chr17:10731820-10731879
Length
56 bp
Sequences
Splice sites
3' ss Seq
ACTTGTTTTGTCCCTTACAGCAA
3' ss Score
11.03
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GCATATCTCGCTGACACTTCCTGCTAGCTTTCGAGGCAAAAGTCACAGCAGCCGCCTGGATTTGGAGCACCAGCACTCAAACCTGTATGCCATATCAG
Seq A exon
CAATGGATGGAGTGCCTTTCATGATCTCAGAGAAGTTTGCCTGTGCTCCTGAAGGG
Seq C2 exon
ATGCAGCCAATTGATCTCTTGGGCATCACAATCAAAACCCTTGCAGAAATTGAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950-'12-13,'12-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.147 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(13.1=100)
A:
PF102404=DUF2464=FE(7.1=100)
C2:
PF102404=DUF2464=FE(7.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCTGACACTTCCTGCTA
R:
AGGGTTTTGATTGTGATGCCCA
Band lengths:
134-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]