DreEX0048104 @ danRer10
Exon Skipping
Gene
ENSDARG00000079478 | mvb12bb
Description
multivesicular body subunit 12Bb [Source:ZFIN;Acc:ZDB-GENE-080414-2]
Coordinates
chr8:33423198-33512013:-
Coord C1 exon
chr8:33511906-33512013
Coord A exon
chr8:33468471-33468562
Coord C2 exon
chr8:33423198-33423256
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTTCTGCCTGTCTTCCCTAGACA
3' ss Score
9.97
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
AGAGCTGAATGGTTTGGGGATTTGGTACCAGCTGGGAAAAGTCCCTAAGTCGCATGACACAACACAGAAAACATTGCCTACCTCTACAAGTATTTGTAGCATTGCCAG
Seq A exon
ACAAGCCCCAAAGTCTCCGGTCTCTAGTCCTACTAAAAAGAACATTGTCAAGCCAGATTATGACGAAATCTACAACATCTACACCAAATCAG
Seq C2 exon
CTATGGATGATATTCCTTTTATGGTCTCCCAAAGGCCTGCCTCCCAGAGCAAATATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079478_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.258 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(14.6=100)
A:
PF102404=DUF2464=FE(12.1=100)
C2:
PF102404=DUF2464=FE(7.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGAATGGTTTGGGGAT
R:
ATCATATTTGCTCTGGGAGGCA
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]