HsaEX6093825 @ hg19
Exon Skipping
Gene
ENSG00000141971 | FAM125A
Description
family with sequence similarity 125, member A [Source:HGNC Symbol;Acc:25153]
Coordinates
chr19:17533141-17534876:+
Coord C1 exon
chr19:17533141-17533267
Coord A exon
chr19:17534502-17534608
Coord C2 exon
chr19:17534815-17534876
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGAGTCATCCCACCTCCAGTAA
3' ss Score
5.36
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGCCTCTGTGTCCAAGAAGAAACGCATGTGTGTGAAGCTGTTGCCCCTGGGAGCCACGGACACGGCTGTGTTTGATGTCCGGCTGAGTGGGAAGACCAAGACAGTGCCTGGATACCTTCGAATAGG
Seq A exon
TAAGGGCGGCCTCCTGGAGCGGACAGCGTCAAGGCTGGGCTCTCGGGCATCCACTCTGCGGAGGAATGACTCCATCTACGAGGCCTCCAGCCTCTATGGCATCTCAG
Seq C2 exon
CCATGGATGGGGTTCCCTTCACACTCCACCCACGATTTGAGGGCAAGAGCTGCAGCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000141971-'3-5,'3-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(16.7=100)
A:
PF102404=DUF2464=PD(4.4=16.2),PF102404=DUF2464=PU(42.2=94.6)
C2:
PF102404=DUF2464=FE(24.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTCTGTGTCCAAGAAGA
R:
AGGGGGCTGCAGCTCTTG
Band lengths:
188-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)