GgaEX6047753 @ galGal3
Exon Skipping
Gene
ENSGALG00000013433 | FAM125A
Description
NA
Coordinates
chrUn_random:30294534-30295869:-
Coord C1 exon
chrUn_random:30295741-30295869
Coord A exon
chrUn_random:30294817-30294914
Coord C2 exon
chrUn_random:30294534-30294598
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATTCCATACTGATTCTGTAGGGC
3' ss Score
6.68
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGAAATCGGTAGCTTTGCCATCTGGTGTAAGAAAGGAGCCCTTCCCCAATGCAGCCCTCCTCCTGTCCCCAAGCCCAGGACAGTCAGCCTGGGGCTGAAGCAGCTCTCGTTGGCCGACTCTGAACAGCA
Seq A exon
GGCACCAGGGAAGCCCGTGGCTCAGTCTGGCTCCAGGCATGCATCGTTCACACTGCACAACTCAGCTGATGATGGCTCCAGCATCTACAACCTCTCAG
Seq C2 exon
CGATGGATGGAGTCCCTTTCACACTACACCCCAAATTCGAGCGCAGTCCCAAATCCGACAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013433-'4-8,'4-7,6-8=AN
Average complexity
A_S
Mappability confidence:
89%=80=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.559 C2=0.182
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(17.3=100)
A:
PF102404=DUF2464=FE(13.3=100)
C2:
PF102404=DUF2464=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGCTTTGCCATCTGGTGT
R:
ATTTGGGACTGCGCTCGAATT
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]