RnoEX6055153 @ rn6
Exon Skipping
Gene
ENSRNOG00000017949 | Mvb12a
Description
multivesicular body subunit 12A [Source:RGD Symbol;Acc:735220]
Coordinates
chr16:19976225-19977481:+
Coord C1 exon
chr16:19976225-19976344
Coord A exon
chr16:19976428-19976534
Coord C2 exon
chr16:19977420-19977481
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACTGTCCCCTGCTTCCCAGCAA
3' ss Score
5.45
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAAGAAATCCAAAGCCCCAAAGCTGGTGCCCAAGCCCGGCACACTCAGCCAGGACATGCGAGGCCTCTCACTGGACCAACCCAAAGAGCCCAG
Seq A exon
CAAAGGTAGCCACCCAGAGCGGACACTGTCCAGACTGGGCTCTCGGGCTTCCACCCTAAGGAGGAACGACTCCATCTATGAGGCATCCAGTCTCTATGGCATTTCAG
Seq C2 exon
CCATGGATGGGGTTCCCTTTACCCTGCACCCGAGATTTGAGGGCAAGAGCTGCGGACCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017949-'7-11,'7-8,8-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.432 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(15.9=100)
A:
PF102404=DUF2464=FE(14.3=100)
C2:
PF102404=DUF2464=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATTGGTGGCTTTGC
R:
CAAGGGTCCGCAGCTCTTG
Band lengths:
182-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]