DreEX6009086 @ danRer10
Exon Skipping
Gene
ENSDARG00000091619 | mvb12ba
Description
multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
Coordinates
chr5:4684586-4691229:-
Coord C1 exon
chr5:4691080-4691229
Coord A exon
chr5:4685061-4685152
Coord C2 exon
chr5:4684586-4684641
Length
92 bp
Sequences
Splice sites
3' ss Seq
CTGTTTGTGTTTCTTAACAGGCA
3' ss Score
12.01
5' ss Seq
CTGGTACCA
5' ss Score
2.73
Exon sequences
Seq C1 exon
AGAGCTGAACAATATGGGCATCTGGTACCGCATGGGGAAAGTGCCACGGACCCAAGACTCTTCACCTGTACAGAACAACTCCAGCAACAACACCACCAATAACATCCAGACGCTCACCAACAACTCCACTCCAGCGCCAGTCTTGCCCAA
Seq A exon
GCACATATCCATGACGCTGCCCGCATGTTTCAGAAAAAGCACAACCAGACCAGACTTTGAACACCAGAACTCCAACCTCTATGCCATTTCTG
Seq C2 exon
CGATGGATGGAGTGCCTTTCATGATTTCTGAGAAGTTTGCAAGTGCCTCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091619-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.601 A=0.188 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(19.2=100)
A:
PF102404=DUF2464=FE(11.9=100)
C2:
PF102404=DUF2464=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGTACCGCATGGGGAAA
R:
TGGAGGCACTTGCAAACTTCT
Band lengths:
182-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]