HsaEX0023912 @ hg19
Exon Skipping
Gene
ENSG00000196814 | FAM125B
Description
family with sequence similarity 125, member B [Source:HGNC Symbol;Acc:23368]
Coordinates
chr9:129157854-129243703:+
Coord C1 exon
chr9:129157854-129157976
Coord A exon
chr9:129184133-129184227
Coord C2 exon
chr9:129243648-129243703
Length
95 bp
Sequences
Splice sites
3' ss Seq
CTCGTCCTTCTCTTCCTCAGGCA
3' ss Score
10.16
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGAACTGAACAGCATGGGGATCTGGTATCGAATGGGCAGAGTACCAAGAAATCATGACTCATCTCAACCCACAACGCCTTCCCAGTCATCAGCTGCCTCCACCCCAGCCCCCAACCTTCCCAG
Seq A exon
GCACATCTCCCTAACACTTCCTGCCACCTTCCGAGGCAGGAACAGCACCCGGACGGACTACGAGTACCAGCACTCCAATTTGTATGCCATATCAG
Seq C2 exon
CAATGGATGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCTTGTGTTCCAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196814_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.631 A=0.121 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PD(23.1=95.2)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(7.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAGCATGGGGATCTGG
R:
TCTGGAACACAAGAAAACTTCTCTGA
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)