RnoEX0056704 @ rn6
Exon Skipping
Gene
ENSRNOG00000017172 | Mvb12b
Description
multivesicular body subunit 12B [Source:RGD Symbol;Acc:1309709]
Coordinates
chr3:12805655-12883552:-
Coord C1 exon
chr3:12883430-12883552
Coord A exon
chr3:12860437-12860531
Coord C2 exon
chr3:12805655-12805710
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCCGTCTCTCTCAGGCA
3' ss Score
10.55
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGAACTGAACAGCATGGGCATCTGGTATCGAATGGGCAGAGTGCCAAGAAACCATGACTCATCTCAACCCACCACGCCCTCCCAGTCATCAGCTGCTTCCACCCCAGCCCCAAACCTTCCCAG
Seq A exon
GCACATCTCCCTGACACTCCCGGCTACCTTCCGAGGCAGAAACAACACCAGCACAGACTATGAGTACCAGCTCTCCAACCTGTATGCCATATCAG
Seq C2 exon
CAATGGACGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCCTGCATCCCAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017172_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(16.3=100)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACAGCATGGGCATCTG
R:
TGGGATGCAGGAAAACTTCTCTG
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]