MmuEX0017907 @ mm9
Exon Skipping
Gene
ENSMUSG00000038740 | Fam125b
Description
family with sequence similarity 125, member B [Source:MGI Symbol;Acc:MGI:1919793]
Coordinates
chr2:33610510-33680690:-
Coord C1 exon
chr2:33680568-33680690
Coord A exon
chr2:33658265-33658359
Coord C2 exon
chr2:33610510-33610565
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCTGTTTCTCTCAGGCA
3' ss Score
10.14
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
GGAACTGAACAGCATGGGCATCTGGTACCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCCCAGTCATCAGCCTCTTCTACCCCAGCCCCAAACCTTCCCAG
Seq A exon
GCACATCTCCCTAACACTACCGGCTACCTTCCGGGGCAGAAACAACACCAGCACAGACTATGAGTACCAGCTCTCCAATCTATATGCCATATCAG
Seq C2 exon
CAATGGATGGTGTGCCTTTTATGATTTCAGAGAAGTTTTCCTGCATTCCAGAAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038740_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.030 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=PD(23.1=95.2)
A:
PF102404=DUF2464=FE(12.7=100)
C2:
PF102404=DUF2464=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACAGCATGGGCATCTG
R:
TGGAATGCAGGAAAACTTCTCTGA
Band lengths:
170-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: