GgaEX1037650 @ galGal3
Exon Skipping
Gene
ENSGALG00000000950 | FAM125B
Description
NA
Coordinates
chr17:10704941-10730118:+
Coord C1 exon
chr17:10704941-10705060
Coord A exon
chr17:10715131-10715228
Coord C2 exon
chr17:10730063-10730118
Length
98 bp
Sequences
Splice sites
3' ss Seq
TCTCCCTTTCTCTTCTTCAGGCA
3' ss Score
11.91
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GGAGTTGAACAACATGGGTATTTGGTACCGGATGGGCAGAGTTCCCCGCAACCATGAATCTTCACAGCCTGCTGCTCCTTCCCAAGCTCCATCTCCAACACCAGCTCCCAGCCTGCCAAG
Seq A exon
GCATATCTCGCTGACACTTCCTGCTAGCTTTCGAGGCAAAAGTCACAGCAGCCGCCTGGATTTGGAGCACCAGCACTCAAACCTGTATGCCATATCAG
Seq C2 exon
CAATGGATGGAGTGCCTTTCATGATCTCAGAGAAGTTTGCCTGTGCTCCTGAAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000950-'11-12,'11-9,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.147 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(15.9=100)
A:
PF102404=DUF2464=FE(13.1=100)
C2:
PF102404=DUF2464=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTGAACAACATGGGTATTTGG
R:
CAGGAGCACAGGCAAACTTCT
Band lengths:
171-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]