MmuEX6036329 @ mm9
Exon Skipping
Gene
ENSMUSG00000031813 | Fam125a
Description
family with sequence similarity 125, member A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:74069446-74070933:+
Coord C1 exon
chr8:74069446-74069565
Coord A exon
chr8:74069649-74069755
Coord C2 exon
chr8:74070872-74070933
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACTGTCCCCTGCTCCCCAGCAA
3' ss Score
5.9
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGACATTGGTGGCTTTGCCATCTGGTGCAAGAAATCCAAAGCCCCAAGGCCGGTGCCCAAGCCCCGCACGCTCAGCCAGGACATGCGAGGCCTCTCCCTGGACCCACCCAAAGAGCCCAG
Seq A exon
CAAAGGAAGCCACCCAGAGCGGACCCTGTCCAGGCTGGGCTCTCGGGCCTCCACTCTACGGAGGACCGACTCCATCTATGAGGCATCCAGTCTCTATGGCATATCAG
Seq C2 exon
CCATGGACGGAGTCCCCTTTACCCTGCACCCAAGATTTGAGGGCAAGAGCTGTGGGCCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813-'6-10,'6-7,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.585 A=0.432 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(15.9=100)
A:
PF102404=DUF2464=FE(14.3=100)
C2:
PF102404=DUF2464=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACATTGGTGGCTTTGC
R:
CCACAGCTCTTGCCCTCAAAT
Band lengths:
175-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: