DreEX0048094 @ danRer10
Exon Skipping
Gene
ENSDARG00000091619 | mvb12ba
Description
multivesicular body subunit 12Ba [Source:ZFIN;Acc:ZDB-GENE-060929-372]
Coordinates
chr5:4682949-4685152:-
Coord C1 exon
chr5:4685061-4685152
Coord A exon
chr5:4684586-4684641
Coord C2 exon
chr5:4682949-4683008
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTGCCTATTTGCCTTTACAGCGA
3' ss Score
9.89
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
GCACATATCCATGACGCTGCCCGCATGTTTCAGAAAAAGCACAACCAGACCAGACTTTGAACACCAGAACTCCAACCTCTATGCCATTTCTG
Seq A exon
CGATGGATGGAGTGCCTTTCATGATTTCTGAGAAGTTTGCAAGTGCCTCCACTGAT
Seq C2 exon
TTGCAGCAGGTGGATCTAATGGGCATCAGAATTAAATCACTTGCAGAGATTGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091619-'10-10,'10-9,11-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(11.9=100)
A:
PF102404=DUF2464=FE(6.9=100)
C2:
PF102404=DUF2464=FE(7.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGCATGTTTCAGAAAA
R:
TCCTTCTCAATCTCTGCAAGTGA
Band lengths:
135-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]