MmuEX0017901 @ mm9
Exon Skipping
Gene
ENSMUSG00000031813 | Fam125a
Description
family with sequence similarity 125, member A [Source:MGI Symbol;Acc:MGI:1920961]
Coordinates
chr8:74069649-74071533:+
Coord C1 exon
chr8:74069649-74069755
Coord A exon
chr8:74070872-74070933
Coord C2 exon
chr8:74071477-74071533
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCTGGGCTCTTTCATTGCAGCCA
3' ss Score
8.92
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CAAAGGAAGCCACCCAGAGCGGACCCTGTCCAGGCTGGGCTCTCGGGCCTCCACTCTACGGAGGACCGACTCCATCTATGAGGCATCCAGTCTCTATGGCATATCAG
Seq A exon
CCATGGACGGAGTCCCCTTTACCCTGCACCCAAGATTTGAGGGCAAGAGCTGTGGGCCCTTG
Seq C2 exon
AACTTGTCTGCTTTTGGGGACCTGACGATCAAATCACTGGCAGACATTGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031813_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102404=DUF2464=FE(14.3=100)
A:
PF102404=DUF2464=FE(7.9=100)
C2:
PF102404=DUF2464=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGAAGCCACCCAGAGC
R:
GTCAGGTCCCCAAAAGCAGAC
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: