GgaEX6047847 @ galGal3
Exon Skipping
Gene
ENSGALG00000013587 | COL2A1
Description
NA
Coordinates
chrUn_random:31474726-31475423:-
Coord C1 exon
chrUn_random:31475370-31475423
Coord A exon
chrUn_random:31475094-31475201
Coord C2 exon
chrUn_random:31474726-31475014
Length
108 bp
Sequences
Splice sites
3' ss Seq
GTTTTGGGGCTCTCTCCTAGGGT
3' ss Score
6.62
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
GGCCCGTCTGGAGACCAAGGTGCTGCCGGTCCCGCTGGTCCCTCCGGTCCCAGA
Seq A exon
GGTCCCCCTGGTCCCGTCGGCCCCTCTGGCAAAGATGGCTCTAACGGCATGCCCGGCCCCATCGGTCCTCCCGGTCCCCGTGGACGGAGTGGTGAACCCGGCCCTGCG
Seq C2 exon
GGTCCTCCTGGAAACCCCGGTCCTCCCGGTCCTCCTGGCCCCCCCGGCACCGGCATCGACATGTCTGCTTTTGCTGGACTGGGTCAGACGGAGAAGGGCCCCGACCCCATCCGCTACATGAGGGCAGACGAGGCGGCCGGAGGGCTGCGGCAGCACGACGTGGAGGTGGATGCCACCCTCAAATCCCTCAACAATCAGATTGAGAGCATCCGCAGCCCCGAGGGCTCCAAGAAGAACCCTGCCAGGACCTGCCGCGACATCAAACTCTGCCATCCCGAGTGGAAGAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013587-'16-18,'16-17,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.856
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(24.6=83.3),PF0139113=Collagen=PU(8.3=27.8)
A:
PF0139113=Collagen=PD(19.3=30.6),PF0139113=Collagen=FE(58.3=100)
C2:
PF0139113=Collagen=PD(28.3=17.5),PF0141013=COLFI=PU(12.4=27.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTGGAGACCAAGGTGCT
R:
GTTGAGGGATTTGAGGGTGGC
Band lengths:
242-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]