Special

ENSBTAG00000013155 @ bosTau6

Biotype
protein_coding
Gene Symbol
COL2A1
Description
Bos taurus collagen, type II, alpha 1 (COL2A1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001113224]
Coordinates
chr5:32450298-32481276:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Exon Skipping
207
chr5:32455478-32455684
+
95.52
11.09
7
Intron Retention
482
chr5:32465153-32465634
+
20
100
0
Intron Retention
277
chr5:32467200-32467476
+
15.29
91.77
0
Intron Retention
93
chr5:32467522-32467614
+
10.45
72.97
0
Intron Retention
173
chr5:32467714-32467886
+
16.11
80.56
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000139219 COL2A1 1-to-1
Human hg19 ENSG00000139219 COL2A1 1-to-1
Mouse mm10 ENSMUSG00000022483 Col2a1 1-to-1
Mouse mm9 ENSMUSG00000022483 Col2a1 1-to-1
Rat rn6 ENSRNOG00000058560 Col2a1 1-to-1
Chicken galGal4 ENSGALG00000013587 COL2A1 1-to-1
Chicken galGal3 ENSGALG00000013587 COL2A1 1-to-1
Zebrafish danRer10 ENSDARG00000011407 col2a1b 1-to-2
Zebrafish danRer10 ENSDARG00000069093 col2a1a 1-to-2
Fruitfly dm6 FBgn0000299 Cg25C 16-to-2
Fruitfly dm6 FBgn0016075 vkg 16-to-2