GgaEX6050564 @ galGal4
Exon Skipping
Gene
ENSGALG00000015382 | CHRNA6
Description
neuronal acetylcholine receptor subunit alpha-6 precursor [Source:RefSeq peptide;Acc:NP_990695]
Coordinates
chrZ:53429472-53431809:+
Coord C1 exon
chrZ:53429472-53429516
Coord A exon
chrZ:53430592-53430701
Coord C2 exon
chrZ:53430822-53431809
Length
110 bp
Sequences
Splice sites
3' ss Seq
CTTATCCGTTCTTCTTTTAGATC
3' ss Score
12.52
5' ss Seq
TAAGTATGA
5' ss Score
1.43
Exon sequences
Seq C1 exon
GATGAAGTCAATCAGATTATGGAAACCAATTTGTGGCTAAGACAC
Seq A exon
ATCTGGAATGACTACAAATTGCGATGGGATCCCAGAGAATATGATGGAATTGAATTTGTTCGGGTACCAGCAGATAAAATTTGGAAACCAGATATTGTCTTATACAATAA
Seq C2 exon
TGCTGTGGGAGATTTTCAAGTTGAAGGCAAGACCAAAGCCCTTCTTCGCTACGATGGGATGATCACCTGGACCCCACCAGCTATATTTAAAAGCTCCTGTCCCATGGATATTACTTTTTTCCCATTTGATCATCAGAACTGTTCATTGAAATTTGGTTCTTGGACTTACGACAAAGCCAAAATTGATCTTCTGATCATTGGCTCCAAAGTAGATATGAATGAGTTTTGGGAAAATAGCGAGTGGGAAATAGTTGATGCTTCTGGCTACAAACATGACATCAAATATAACTGCTGTGAAGAGATCTACACAGATATAACATATTCATTTTATATTCGAAGGCTGCCAATGTTCTACACCATAAATCTGATTATTCCCTGTCTCTTCATCTCATTCCTGACTGTGCTAGTTTTTTACCTGCCATCTGACTGTGGTGAGAAGGTGACTCTTTGCATCTCTGTGTTGCTTTCTTTGACTGTATTTTTACTAGTGATCACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015382-'2-4,'2-2,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.079
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
PF0293118=Neur_chan_LBD=FE(17.4=100)
C2:
PF0293118=Neur_chan_LBD=PD(55.6=34.8),PF103294=DUF2417=WD(100=48.5),PF0293211=Neur_chan_memb=PU(86.2=62.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTCAATCAGATTATGGAAACCA
R:
ACTTTGGAGCCAATGATCAGA
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]