GgaEX7000335 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24091373-24097370:+
Coord C1 exon
chr1:24091373-24091586
Coord A exon
chr1:24093576-24093759
Coord C2 exon
chr1:24096414-24097370
Length
184 bp
Sequences
Splice sites
3' ss Seq
TATCCTCTTTTAAATCCCAGATT
3' ss Score
7.63
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ATTCTGCTATTTTGCTGAAAATTCAAAACATACTTCTTGAATATGAACAGATAATAGATTGTGAAAAAAAACGCTACACAGCTCTCTGGAGAGAAGTCAAGAAGTTGGAAAGTGAAAAAGAGGAGTCACAGTTAATAGCAGAAGAGACTCAAGATTTGAAATCCATATTGGCTCACCAAGAAATGGAATTGAAAAGTGATATCCAAAGCCTTAA
Seq A exon
ATTTTCTTTGAAACAAGAAGAGGAAAAGAGGCTTAGAGCTGAAATGCAATATGAAAAAATGAGAGAACAACTAAGGAGGAAAGAGGATCAATATTGTAGAGAAACAGAGGAGAGACAACAACTTGAGTTGCATGCAAGGAATTTAGAAACAGAGTTAATAACGCTGAGAAAGCTCATGAAACAG
Seq C2 exon
GAATCTGACACTAATGACAGAGAAAAGGATCTGCTGCACAGAAATCAGTTACTGCAAGAAGAGATTGCTATGCTAAGGCTAGAACTTGATCAAGTAAAACTTAGGCACCAGGAGAATGAAGGAAAATATTTAGAGGAAAATGAGTCTTTGAAAGAAAAAAATGATGACCTTCAGAAGGAACTTAAACTGAATGAGGAAGCCTTAACACAAACAGTACTTCAGTACAATGGACAGCTGAATTTACTCAAGACAGAATCTGCAATGCTAACTTCCAAGCTTGAACAGACAAAAGAAAGCAAAGACAGACTGGAAACAGAGATTGAATCATTCCGTTCCCGCTTGAATGCGGCTGTTCAAGATCTTGAACGTCATCAGTCATTGAAAAGTGATGTCGAACGAACATTTCAGAGAGAACGTGATGAATGGCTTCGTTTACAAGACAAGCTCCATTGTGAGCTCTCTGATGTGCGGGAGACCAACAAGAGCTTGTCTCAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104-'28-28,'28-26,29-28=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.274 C2=0.323
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF149151=CCDC144C=WD(100=95.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGAAGTCAAGAAGTTGGA
R:
TCCTTCATTCTCCTGGTGCCT
Band lengths:
251-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]