MmuEX6006491 @ mm10
Exon Skipping
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118524945-118527869:-
Coord C1 exon
chr6:118527656-118527869
Coord A exon
chr6:118525733-118525916
Coord C2 exon
chr6:118524945-118525082
Length
184 bp
Sequences
Splice sites
3' ss Seq
GTGAGCACATTTAATTTCAGATT
3' ss Score
5.14
5' ss Seq
CAGGTATGC
5' ss Score
9.37
Exon sequences
Seq C1 exon
ATACTGCTAGTCTATTGAAAATCCGGGATGCCGTTTATTCATATAAACGATTAATAGAACTTAAAAGAAGCCACTGTGAACTACTTACAGGAAAACTGAAAAGAATGGAAAACAAATATAAGGGATTGCAGAAGGAAATGTCAGAGACAGAAGAAGTGAAGTCACGGTTGGAACATGAAAAGGTCGGATGGGAACAGGAGCTCTGCAGGCTGAG
Seq A exon
ATTTGCACTGAAACAAGAGGAAGAGAAGAGGAGGAGTGCAGACCAGCTTTCTGAGAAAACCTCGGAGCAGCTTAGAAGGAAAGGCGAGCAGTGTCAGAGTGAGGTGGAAGCCAGGCAGCAGCTTGAAGCCTCTCTCAGAACCCTGGAGATGGAGCTGAAGACGGTGAAAAGCCATCTCAACCAG
Seq C2 exon
GTCTTAGAGGAACGAAATGAGACTCAGAGGCAGCTCTCCCGAGAACAGAATGCCAGAATGTTACAAGATGGGATTCTTGCAAGTCACCTCTGCAAGCAAAAGGAGATAGAAATGACGCAGAAGAAAATGACTTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-'28-32,'28-31,30-32=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.452 C2=0.609
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(21.6=100)
A:
PF0157614=Myosin_tail_1=FE(18.5=100)
C2:
PF0157614=Myosin_tail_1=FE(13.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAATCCGGGATGCCGTTT
R:
TGGCATTCTGTTCTCGGGAGA
Band lengths:
254-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types