HsaEX6087933 @ hg19
Exon Skipping
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27326115-27329107:-
Coord C1 exon
chr10:27328894-27329107
Coord A exon
chr10:27326800-27326983
Coord C2 exon
chr10:27326115-27326252
Length
184 bp
Sequences
Splice sites
3' ss Seq
ATAAACATATTTAACTGCAGATT
3' ss Score
6.83
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATTCTGTTAGCCTATTGAAAATCCAGGATGCAGCTCTTTCATGTGAAAGATTATTAGAACTTAAAAAAAATCACTGTGAACTACTTACAGTAAAAATTAAAAAAATGGAAGACAAGGTTAATGTACTACAAAGGGAGCTATCTGAAACAAAAGAAATAAAATCACAGTTAGAGCATCAAAAAGTTGAATGGGAACGAGAACTGTGCTCTTTGAG
Seq A exon
ATTTAGCTTAAACCAAGAAGAAGAGAAGAGAAGAAATGCTGATACGTTGTATGAAAAAATTAGGGAACAGTTAAGAAGAAAAGAAGAGCAATATAGGAAAGAAGTTGAAGTGAAACAACAGCTTGAACTGAGTCTCCAAACACTGGAGATGGAATTGAGGACTGTAAAAAGTAATTTGAATCAG
Seq C2 exon
GTCGTTCAAGAGCGAAATGACGCTCAGAGGCAACTTTCTCGAGAACAGAATGCCAGAATGTTACAAGATGGAATTCTGACCAATCACCTTTCCAAACAAAAGGAGATTGAAATGGCTCAAAAGAAAATGAATTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-'30-33,'30-31,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.145 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAAATCCAGGATGCAGCTCT
R:
TCGAGAAAGTTGCCTCTGAGC
Band lengths:
242-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)