GgaEX7003314 @ galGal4
Exon Skipping
Gene
ENSGALG00000016341 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr3:89271485-89400123:+
Coord C1 exon
chr3:89271485-89271679
Coord A exon
chr3:89290782-89290989
Coord C2 exon
chr3:89400011-89400123
Length
208 bp
Sequences
Splice sites
3' ss Seq
ATCACTATTTTGTTCATCAGCTG
3' ss Score
5.06
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTTTACCTAGTCATACATGTGGCAACCCAGGAGAAATACCTAAAGGAGTACTTCATGGAACAAGATTCAACATTGGAGATAAAATCCGATATAGCTGTATCTCTGGTTACATCTTAGAAGGCCATGCCATGTTGACATGTATTGTGAGTCCTGGAAATGGTGCATCGTGGGATTTTCCAGTTCCTTTTTGCAGAG
Seq A exon
CTGAAGGAGCATGTGGAGGGACACTACGTGGGACAAGTGGAACTATTTCAAGTCCTCACTTCCCTTCAGAGTACGAAAATAATGCTGACTGCACCTGGACCATATTGGCTGAACCAGGAGATACTATTGCTTTGATCTTTACTGACTTCCAGTTGGAAGAAGGATACGACTTCTTAGAGATCAGTGGAACAGAAGCACCTTCAATATG
Seq C2 exon
GCTCACTGGTATGAATCTACCCTCCCCTGTTATCAGCAGTAAGAACTGGTTACGACTTCATTTTACATCTGACAGCAACCACCGGCGAAAGGGATTTAATGCTCAGTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016341-'1-10,'1-5,5-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(63.7=92.9)
C2:
PF0043115=CUB=PD(35.3=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGGTCTGGCATGTGAGGGA
R:
CTTGAAACTGAGCATTAAATCCCT
Band lengths:
212-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]