MmuEX6034660 @ mm10
Exon Skipping
Gene
ENSMUSG00000060924 | Csmd1
Description
CUB and Sushi multiple domains 1 [Source:MGI Symbol;Acc:MGI:2137383]
Coordinates
chr8:16501280-16710702:-
Coord C1 exon
chr8:16710508-16710702
Coord A exon
chr8:16697916-16698123
Coord C2 exon
chr8:16501280-16501392
Length
208 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTCTGCCCCTGCAGCTG
3' ss Score
10.17
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
TTTTACCTAGTCACACGTGTGGAAACCCTGGGGAGATACTGAAAGGAGTTCTCCACGGAACGAGGTTCAACATAGGCGACAAGATCAGGTACAGCTGTCTCTCCGGCTACATCTTGGAAGGTCACGCCATTCTGACTTGCATTGTCAGCCCTGGGAATGGTGCATCCTGGGACTTCCCAGCTCCTTTCTGCAGAG
Seq A exon
CTGAGGGAGCCTGCGGGGGAACCCTAAGGGGAACCAGCGGTTCCATATCCAGCCCTCACTTCCCCTCTGAGTATGACAATAATGCCGACTGCACGTGGACCATCTTGGCTGAGCCTGGGGACACCATTGCTCTTGTTTTTACTGACTTCCAGCTGGAGGAAGGATACGACTTCTTAGAGATCAGCGGGACAGAAGCACCATCCATATG
Seq C2 exon
GCTCACAGGCATGAACCTCCCATCCCCTGTGATCAGCAGCAAGAACTGGCTCCGTCTCCACTTTACATCTGACAGCAATCACCGACGTAAAGGGTTCAATGCTCAGTTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060924-'13-27,'13-21,14-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(63.7=92.9)
C2:
PF0043115=CUB=PD(35.3=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACACGTGTGGAAACCCTG
R:
TGGAACTGAGCATTGAACCCT
Band lengths:
297-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types