GgaEX7004084 @ galGal4
Exon Skipping
Gene
ENSGALG00000015623 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:81522417-81532425:-
Coord C1 exon
chr4:81532329-81532425
Coord A exon
chr4:81527974-81528047
Coord C2 exon
chr4:81522417-81522530
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACACTTTTCATTCTTTCCAGGTG
3' ss Score
11.84
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGTTTACAGAGGATGGAAATTTATGCACATTTCCTTTCCGGTATGGTGGAAGGCTTTATCACTCGTGTTTATCAAATCTGTTTTCCCGAAAGAAATG
Seq A exon
GTGCTCAACAACACGTAACTACGACCGGGACAGGAAATGGGGGTACTGCACGCTGCTATCCACAGAGCACTCAG
Seq C2 exon
ATTACTGCGCAAACAACCCTTGCCAAAATGGAGGGACCTGTTTTCTTGCTCATGGTCATAGGACGTACCACTGTGCCTGTCCCGAGGAATTCACGGGAAGAGACTGTCAGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015623-'2-4,'2-3,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(58.5=72.7)
A:
PF0004014=fn2=PD(39.0=61.5)
C2:
PF0000822=EGF=WD(100=84.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCCGGTATGGTGGAAGGC
R:
TCTGACAGTCTCTTCCCGTGA
Band lengths:
175-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]