HsaEX0029890 @ hg19
Exon Skipping
Gene
ENSG00000109758 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:4894]
Coordinates
chr4:3444777-3445888:+
Coord C1 exon
chr4:3444777-3444873
Coord A exon
chr4:3445068-3445147
Coord C2 exon
chr4:3445766-3445888
Length
80 bp
Sequences
Splice sites
3' ss Seq
ACGCAGGTGTCGCCCCCCAGGTG
3' ss Score
6.44
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CACTCACCGAGGACGGGAGGCCCTGCAGGTTCCCCTTCCGCTACGGGGGCCGCATGCTGCATGCCTGCACTTCGGAGGGCAGTGCACACAGGAAGTG
Seq A exon
GTGTGCCACAACTCACAACTACGACCGGGACAGGGCCTGGGGCTACTGTGTGGAGGCCACCCCGCCTCCAGGGGGCCCAG
Seq C2 exon
CTGCCCTGGATCCCTGTGCCTCCGGCCCCTGCCTCAATGGAGGCTCCTGCTCCAATACCCAGGACCCCCAGTCCTATCACTGCAGCTGCCCCCGGGCCTTCACCGGCAAGGACTGCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109758_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.036 C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(58.5=72.7)
A:
PF0004014=fn2=PD(39.0=57.1)
C2:
PF0000822=EGF=WD(100=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCAGGTTCCCCTTC
R:
GCAGCTGCAGTGATAGGACTG
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)