BtaEX6039920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40261321-40262659:-
Coord C1 exon
chr7:40262560-40262659
Coord A exon
chr7:40261716-40261786
Coord C2 exon
chr7:40261321-40261431
Length
71 bp
Sequences
Splice sites
3' ss Seq
AGCTTTCTCTCTTTCTACAGGTG
3' ss Score
12.18
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
Exon sequences
Seq C1 exon
TTCTCACTGTCACCGGGGAACCCTGCCACTTCCCCTTCCAGTACCACCGGCAGCTGCATCATAAATGCACCCACAGAGGCCGGCCAGGCCCCCGACCTTG
Seq A exon
GTGTGCTACTACCCCCAACTTTGAGAAGGACCAACGATGGGCATACTGCCTGGAGCCCAAGAAAGTGAAAG
Seq C2 exon
ACCACTGCAGCAAACACAATCCCTGCCAGAAGGGAGGGACCTGTGTGAACATGCCGGATGGCCCACGCTGCATCTGTGCAGATCACTTCACTGGGAAGCACTGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(59.5=73.5)
A:
PF0004014=fn2=PD(38.1=64.0)
C2:
PF0000822=EGF=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGCAGCTGCATCATAAA
R:
CTTTCTGGCAGTGCTTCCCAG
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]