MmuEX6058592 @ mm9
Exon Skipping
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55523328-55524133:-
Coord C1 exon
chr13:55524034-55524133
Coord A exon
chr13:55523767-55523837
Coord C2 exon
chr13:55523328-55523438
Length
71 bp
Sequences
Splice sites
3' ss Seq
AAACCTCATCTATCCCCCAGGTG
3' ss Score
9.12
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTCTCACTGTGGATGGGAGGCTCTGCCATTTTCCCTTTCAGTACCACCGTCAGCTACACCACAAATGCATCCACAAAAGGCGGCCAGGCTCCCGCCCCTG
Seq A exon
GTGTGCTACCACCCCCAACTTTGATGAAGATCAGCAATGGGGATACTGCTTGGAGCCCAAGAAAGTGAAAG
Seq C2 exon
ACCATTGCAGCAAACACAACCCGTGCCACAAAGGAGGGACATGTATCAACACCCCCAATGGGCCACACTGTCTCTGCCCTGAACACCTCACTGGGAAACATTGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(59.5=73.5)
A:
PF0004014=fn2=PD(38.1=64.0)
C2:
PF0000822=EGF=WD(100=84.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTTCAGTACCACCGTCAGC
R:
GGCAATGTTTCCCAGTGAGGT
Band lengths:
172-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: