MmuEX6017194 @ mm9
Exon Skipping
Gene
ENSMUSG00000029102 | Hgfac
Description
hepatocyte growth factor activator [Source:MGI Symbol;Acc:MGI:1859281]
Coordinates
chr5:35385215-35386331:+
Coord C1 exon
chr5:35385215-35385311
Coord A exon
chr5:35385504-35385583
Coord C2 exon
chr5:35386209-35386331
Length
80 bp
Sequences
Splice sites
3' ss Seq
CCTCTGACTCGACCCTCCAGGTG
3' ss Score
9.35
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
TGCTCACCGAGTCTGGGCAGCCGTGCAGGTTCCCTTTCCGCTACGGTGGCCGCATGCTGCACTCCTGTACCTCTGAGGGAAGTGCCTACAGGAAGTG
Seq A exon
GTGCGCTACAACACACAACTATGACCGAGACCGGGCCTGGGGCTACTGTGCAGAGGTGACCCTGCCTGTGGAAGGTCCAG
Seq C2 exon
CTATCCTTGACCCTTGTGCCTCTGGGCCCTGCCTCAATGGGGGCACATGTTCCAGTACACATGACCATGGGTCCTACCACTGCTCTTGCCCGCTGGCCTTCACAGGCAAGGACTGTGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029102-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004014=fn2=PU(58.5=72.7)
A:
PF0004014=fn2=PD(39.0=57.1)
C2:
PF0000822=EGF=WD(100=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGCACTCCTGTACCTCT
R:
CTGTGCCACAGTCCTTGCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: