GgaEX7006713 @ galGal4
Exon Skipping
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4532228-4566310:-
Coord C1 exon
chr8:4566199-4566310
Coord A exon
chr8:4536786-4536950
Coord C2 exon
chr8:4532228-4532454
Length
165 bp
Sequences
Splice sites
3' ss Seq
TCCTTTCTTCTTTCATGCAGACG
3' ss Score
9.93
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GAATGTTTACAAGGATTACCGTTTCCTTGAACTAGCCTGTGACTCCCAAGAGGAGGTGGATAGCTGGAAGGCATCTCTGCTACGAGCCGGTGTCTATCCTGATAAATCCTCA
Seq A exon
ACGGAAAATGATGAGAATGGCCAAGCGGACAATTTTTCAATGGACCCCCAATTGGAGAGACAGGTGGAGACGATTCGAAATCTGGTGGACTCCTACATGTCTATTATCAACAAATGTATCCGAGACTTGATACCGAAAACAATCATGCACCTTATGATCAATAAC
Seq C2 exon
GTGAAAGAATTTATCAACGCTGAGCTCCTGGCTCACCTGTATTCTTCTGAGGACCAAAATACTCTAATGGAGGAATCAGCTGAGCAGGCACAGAGGCGAGATGAAATGCTCCGCATGTACCAAGCTCTAAAGGAAGCCCTAGCAATCATTGGTGATATCAGCACTAGCACTGTGTCAACCCCTGCACCACCTCCTGTAGACGATTCTTGGCTTCAGCAGGCCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164-'42-30,'42-29,49-30=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=0.309 C2=0.633
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
PF0221213=GED=PU(41.3=69.1)
C2:
PF0221213=GED=PD(56.5=68.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGATAGCTGGAAGGCAT
R:
AGGGGTTGACACAGTGCTAGT
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]