RnoEX0029079 @ rn6
Exon Skipping
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:79928400-80000033:-
Coord C1 exon
chr13:79999922-80000033
Coord A exon
chr13:79936418-79936582
Coord C2 exon
chr13:79928400-79928626
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCCGTTCTGTCAGACT
3' ss Score
7.48
5' ss Seq
AATGTAAGT
5' ss Score
8.62
Exon sequences
Seq C1 exon
GAATGTCTACAAAGACTATCGTTCCCTGGAGCTGGCCTGTGATTCCCAGGAGGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCTGGCGTCTATCCAGACAAGTCTTTT
Seq A exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTCTCCATGGACCCGCAGTTGGAGAGGCAAGTGGAGACTATTCGCAACCTCGTAGACTCCTACATGTCGATAATCAACAAATGCATCCGAGACCTAATTCCAAAAACAATAATGCACCTTATGATCAATAAT
Seq C2 exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCCTCTGAGGACCAGAACACACTAATGGAAGAATCCGTGGAGCAGGCTCAGCGCCGGGATGAGATGCTCCGGATGTACCAAGCCCTGAAAGAAGCCCTCGCGATCATTGGCGACATCAACACGGTCACTGTGTCCACCCCAGCCCCACCTCCAGTAGATGACTCCTGGCTCCAGCATTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490-'39-34,'39-31,44-34
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.285 C2=0.557
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
PF0221213=GED=PU(41.3=69.1)
C2:
PF0221213=GED=PD(56.5=68.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAGGAGGATGTGGACAG
R:
ACAGTGACCGTGTTGATGTCG
Band lengths:
243-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]