MmuEX0015309 @ mm9
Exon Skipping
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:163941832-164014275:-
Coord C1 exon
chr1:164014164-164014275
Coord A exon
chr1:163949959-163950123
Coord C2 exon
chr1:163941832-163942058
Length
165 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTCCATTCTGTCAGACT
3' ss Score
6.81
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
GAATGTATACAAAGACTATCGCTTCCTGGAGCTGGCCTGTGATTCCCAGGAAGATGTGGACAGCTGGAAGGCGTCTCTGCTCAGAGCCGGGGTCTACCCAGATAAATCTGTA
Seq A exon
ACTGAAAATGATGAAAATGGACAAGCAGAAAACTTTTCCATGGACCCACAGTTGGAGAGGCAAGTGGAGACCATACGCAACCTAGTAGACTCCTACATGTCAATAATCAACAAATGCATCCGAGACTTAATTCCAAAAACAATAATGCATCTTATGATCAATAAC
Seq C2 exon
GTTAAAGACTTCATCAACTCTGAACTCCTAGCACAGCTCTACTCTTCTGAGGACCAGAACACTCTGATGGAAGAGTCCGCGGAGCAGGCTCAGCGCCGAGATGAGATGCTCCGAATGTACCAAGCCCTGAAAGAAGCTCTCGCAATCATTGGTGACATCAACACGGCCACGGTGTCCACCCCAGCCCCACCTCCAGTCGATGACTCCTGGCTCCAACACTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.309 C2=0.603
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(27.9=76.3)
A:
PF0221213=GED=PU(41.3=69.1)
C2:
PF0221213=GED=PD(56.5=68.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTATCGCTTCCTGGAGCT
R:
CGAGAGCTTCTTTCAGGGCTT
Band lengths:
242-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: