GgaEX7008302 @ galGal4
Exon Skipping
Gene
ENSGALG00000000608 | CDH1
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18322564-18323254:+
Coord C1 exon
chr11:18322564-18322739
Coord A exon
chr11:18322851-18322979
Coord C2 exon
chr11:18323069-18323254
Length
129 bp
Sequences
Splice sites
3' ss Seq
GTGGTGTCCTCATCCTGCAGACC
3' ss Score
10.2
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
GCACCTCCGTGATGACCGTGAACGCCACGGATGCGGACGATGCGGTGAACACGGACAACGGCATCGTCAGCTACTCCATCGTCAGCCAGCAGCCGCCCCGCCCGCACCCCCAGATGTTCACCATTGACCCGGCCAAGGGCATCATCAGCGTGCTGGGCACGGGGCTGGACCGGGAG
Seq A exon
ACCACTCCCAACTACACACTGATCGTCCAGGCCACGGACCAGGAGGGCAAGGGTCTGTCCAACACCGCCACGGCCATCATTGAGGTCACGGATGCCAACGACAACATTCCCATCTTCAACCCCACCATG
Seq C2 exon
TACGAAGGTGTGGTGGAAGAGAATAAGCCAGGTACAGAGGTGGCCAGGCTGACTGTGACGGACCAGGACGCACCAGGCTCCCCAGCCTGGCAAGCCGTTTACCACATCAAGAGTGGGAACCTGGATGGTGCCTTCAGCATTATTACTGACCCCAGCACCAACAACGGAATCCTGAAGACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=0.395 C2=0.371
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(61.0=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGTCAGCTACTCCATCG
R:
CCATCCAGGTTCCCACTCTTG
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]