MmuEX6038205 @ mm10
Exon Skipping
Gene
ENSMUSG00000000303 | Cdh1
Description
cadherin 1 [Source:MGI Symbol;Acc:MGI:88354]
Coordinates
chr8:106657740-106659772:+
Coord C1 exon
chr8:106657740-106657915
Coord A exon
chr8:106658191-106658319
Coord C2 exon
chr8:106659590-106659772
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTTTGGTGTCTACAGAGT
3' ss Score
7.93
5' ss Seq
ACGGTAACT
5' ss Score
7.53
Exon sequences
Seq C1 exon
GAACCTCCGTGATGAAGGTCTCAGCCACCGATGCAGACGATGACGTCAACACCTACAACGCTGCCATCGCCTACACCATCGTCAGCCAGGATCCTGAGCTGCCTCACAAAAACATGTTCACTGTCAATAGGGACACCGGGGTCATCAGTGTGCTCACCTCTGGGCTGGACCGAGAG
Seq A exon
AGTTACCCTACATACACTCTGGTGGTTCAGGCTGCTGACCTTCAAGGTGAAGGCTTGAGCACAACAGCCAAGGCTGTGATCACTGTCAAGGATATTAATGACAACGCTCCTGTCTTCAACCCAAGCACG
Seq C2 exon
TATCAGGGTCAAGTGCCTGAGAATGAGGTCAATGCCCGGATCGCCACACTCAAAGTGACCGATGATGATGCCCCCAACACTCCGGCGTGGAAAGCTGTGTACACCGTAGTCAACGATCCTGACCAGCAGTTCGTTGTTGTCACAGACCCCACGACCAATGATGGCATTTTGAAAACAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000303-'20-12,'20-11,21-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=0.116 C2=0.443
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(60.6=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTACAACGCTGCCATC
R:
CTGCTGGTCAGGATCGTTGAC
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types