BtaEX6081142 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015991 | E-CADHERIN
Description
Bos taurus cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_001002763]
Coordinates
chr18:36229782-36231711:+
Coord C1 exon
chr18:36229782-36229957
Coord A exon
chr18:36230232-36230360
Coord C2 exon
chr18:36231529-36231711
Length
129 bp
Sequences
Splice sites
3' ss Seq
GCTGTGTTTGATCTCTGCAGAGT
3' ss Score
8.58
5' ss Seq
ACGGTAACC
5' ss Score
6.62
Exon sequences
Seq C1 exon
GAACCTCTGTGATGCAGGTCACGGCCACAGATATAGATGACGAGGTGAACACCTACAACGCTGCCATCGGTTACAAAATCCTAGCCCAAGATCCCATGCTGCCGCACAACAAAATGTTCACCATCAACAAGGAAACAGGCGTCATCAGTGTGCTCACCACCGGGCTGGACCGTGAG
Seq A exon
AGTTTTCCCACATACACCCTGATGGTCCAAGCAGCAGACCTTAACGGCGAAGGCTTGAGCACAACTGCAACGGCCGTGATCACAGTCTTGGACACCAATGATAATGCTCCCAGATTCAACCCAACCACG
Seq C2 exon
TACGTGGGGTCAGTGCCTGAGAACGAGGCTAATGTGGCCATCACCACACTCACAGTGACTGATGCCGACGACCCCAACACCCCGGCATGGGAGGCTGTTTACACAGTATTAAATGATAACGAGAAGCAATTTATCGTCGTCACAGACCCAGTCACCAATGAAGGCACTCTGAAAACAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015991-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.093 C2=0.311
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(60.6=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCCGCACAACAAAATGTT
R:
GCCTTCATTGGTGACTGGGTC
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]