HsaEX6044574 @ hg38
Exon Skipping
Gene
ENSG00000039068 | CDH1
Description
cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]
Coordinates
chr16:68811684-68813495:+
Coord C1 exon
chr16:68811684-68811859
Coord A exon
chr16:68812135-68812263
Coord C2 exon
chr16:68813313-68813495
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTGTGTCGATCTCTCTGCAGAGT
3' ss Score
10.17
5' ss Seq
ACGGTAATT
5' ss Score
7.31
Exon sequences
Seq C1 exon
GAACCTCTGTGATGGAGGTCACAGCCACAGACGCGGACGATGATGTGAACACCTACAATGCCGCCATCGCTTACACCATCCTCAGCCAAGATCCTGAGCTCCCTGACAAAAATATGTTCACCATTAACAGGAACACAGGAGTCATCAGTGTGGTCACCACTGGGCTGGACCGAGAG
Seq A exon
AGTTTCCCTACGTATACCCTGGTGGTTCAAGCTGCTGACCTTCAAGGTGAGGGGTTAAGCACAACAGCAACAGCTGTGATCACAGTCACTGACACCAACGATAATCCTCCGATCTTCAATCCCACCACG
Seq C2 exon
TACAAGGGTCAGGTGCCTGAGAACGAGGCTAACGTCGTAATCACCACACTGAAAGTGACTGATGCTGATGCCCCCAATACCCCAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGAACAACGATGGCATTTTGAAAACAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039068-'25-23,'25-22,27-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=0.329 C2=0.121
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(58.0=100)
A:
PF0002812=Cadherin=PD(29.0=67.4)
C2:
PF0002812=Cadherin=PU(60.6=98.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGATCCTGAGCTCCCTGA
R:
TGCCATCGTTGTTCACTGGAT
Band lengths:
257-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains