DreEX6007646 @ danRer10
Exon Skipping
Gene
ENSDARG00000035796 | si:ch211-206i14.2
Description
si:ch211-206i14.2 [Source:ZFIN;Acc:ZDB-GENE-110407-4]
Coordinates
chr7:54880293-54880969:+
Coord C1 exon
chr7:54880293-54880465
Coord A exon
chr7:54880550-54880678
Coord C2 exon
chr7:54880784-54880969
Length
129 bp
Sequences
Splice sites
3' ss Seq
AACAATGCCTTACCTTTCAGCAA
3' ss Score
7.57
5' ss Seq
ACGGTATTG
5' ss Score
4.64
Exon sequences
Seq C1 exon
GTCATGAGTTTATGGCAGTCACAGCCACTGATGCTGATGACCCAGATACTTTTAACGCTGATGTCAGATACAAAATTGTTAGCCAAGATCCATTATTACCAAATCCAAACATGTTTGAAATCAACTTGGTTACTGGAGGAATTTATGTAAAATTCTTAGGTCTAGACAGAGAG
Seq A exon
CAATTGTCCAGATATACTTTGGTAATTCAAGCTGCAGATCTTCAAGGAGATGGTATGATGACCACTGGCACAGCAGTTATTACTGTTACTGACAGCAATGATAACGCACCTCAGTTTGACGAAACCACG
Seq C2 exon
CACATCGTATCTGTCTCAGAGAATCAAGTAGCGGCTATAGTGGCCAAACTTCCAGTTATTGATGCAGATGAACTTGGATCACCAGCCTGGTCCACCAAGTATCGGATCATTAGTGGTGACAAGGGTGGGTTTTTCAATGTCAGCACTGGACCCAGCCGTCTAGAGGGCGTCATAATGACTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035796-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.299 C2=0.008
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=FE(57.6=100)
A:
PF0002812=Cadherin=PD(29.3=67.4)
C2:
PF0002812=Cadherin=PU(61.0=98.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCACTGATGCTGATGAC
R:
CCAGGCTGGTGATCCAAGTTC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]