GgaEX7009163 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4897990-4900843:-
Coord C1 exon
chr15:4900645-4900843
Coord A exon
chr15:4899697-4899891
Coord C2 exon
chr15:4897990-4898166
Length
195 bp
Sequences
Splice sites
3' ss Seq
TTGTTCTTCTGAATGAACAGGTC
3' ss Score
7.18
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGAAGATAGAGCTGCTGCAAAAAAGAAAATAGCAGAGGCCAAAAGTACTCTTGAACAGTGGAAGAAATCTTATTTTGCTGTTCGTGCCCAGATTGAAGCATCAGGAAGAGAGCAACACTGGGAATTTGACCGAAAACTTTTATTTGGGAAAACAGATAATATGACTTCAGTCTGTCAAGATCTGTATGACATTTTGCAG
Seq A exon
GTCACTGAAGAGTTTCACAATGTATTTGGTTCTGAAATGAAAGCTGTCACAGGTGATCCAAAGTACGTTGATGATCTTCTGAGAAGAGTGGTTGAACTAACTAGTCCAATGGAAGAGCTGGCTTTTGACCCTTTTAGCCTTGAAGGTGCACATGACTGGAAATTAATTATGGAAGAATTTAAAGTGGGAGTTTCA
Seq C2 exon
GTTGAATATGTTAAACAAATCTTTGTTCAAAACCTCATGGATCCACCCTTATTCAAGAATCATCCTCCACTGGCTGGAGCAATATACTGGTCCCGATCACTTTTCTATCGCATCAAACACACTATTGTTCGATTTCAGGAAGTAGAGGGGTTGCTTGCTAGTGAACGTGGAAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'9-20,'9-18,10-20=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(21.5=100)
A:
PF083857=DHC_N1=FE(21.8=100),PF083857=DHC_N1=PU(1.8=5.9)
C2:
PF083857=DHC_N1=PD(0.1=0.0),PF083857=DHC_N1=FE(25.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGAGCAACACTGGGA
R:
GCAAGCAACCCCTCTACTTCC
Band lengths:
255-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]