MmuEX6021097 @ mm10
Exon Skipping
Gene
ENSMUSG00000038011 | Dnah10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:124743531-124747773:+
Coord C1 exon
chr5:124743531-124743729
Coord A exon
chr5:124746543-124746737
Coord C2 exon
chr5:124747603-124747773
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTTCCCACTACCAGGTC
3' ss Score
10.19
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
GGAAAACCGAGCAAACGCGCAGTTCAAGACCCAGGAGGCTAGAAACACTCTCAAGCTATGGAAAAAATCTTACTTCGATATTCGGGCCAAGATTGAGGCTTCTGGTCGGGAGGCACGATGGGAGTTTGACCGGAAGCGATTGTTTGAGAGAACAGACTACATGGCCAACATCTGCCAGGACCTTTCAGATGTTCTGCAG
Seq A exon
GTCTTGGAAGAATTTTACAACATATTTGGCCCAGAGCTCAAGGCTGTGACAGGGGACCCCAAGAGAATCGACGATGTCCTTGGCCGGGTAGACAGCTTGGTGGCTCCTATGGAAAGCCTGAGCTTTGATCCATTCAGCATCAGATCCTCCCCATACTGGAAATACGTGATGGAGGACTTCAAGCTTGAAGTTCTG
Seq C2 exon
GTTATTGAGAAAGAAGCCAAAAATTTCATTGATGAATCTTTCAAAACACTTCGCTCAGCGGAAGCGGCCTTCGACATGCTGCTAAAATTCAAGCATATCCGCTCCCGGGAAGCCATCAACCGTCAGATGATGATGAAGTTTAATGACATCCTGGCACAGTACTACAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'11-13,'11-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.4=100)
A:
PF083857=DHC_N1=FE(21.1=100),PF083857=DHC_N1=PU(4.0=13.8)
C2:
PF083857=DHC_N1=FE(9.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGGAGGCTAGAAACACT
R:
TTTAGCAGCATGTCGAAGGCC
Band lengths:
257-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types