MmuEX6021097 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125223901-125228937:+
Coord C1 exon
chr5:125223901-125224099
Coord A exon
chr5:125226913-125227107
Coord C2 exon
chr5:125228761-125228937
Length
195 bp
Sequences
Splice sites
3' ss Seq
TCCTGTCTTCCCACTACCAGGTC
3' ss Score
10.19
5' ss Seq
CTGGCAAGT
5' ss Score
2.89
Exon sequences
Seq C1 exon
GGAAAACCGAGCAAACGCGCAGTTCAAGACCCAGGAGGCTAGAAACACTCTCAAGCTATGGAAAAAATCTTACTTCGATATTCGGGCCAAGATTGAGGCTTCTGGTCGGGAGGCACGATGGGAGTTTGACCGGAAGCGATTGTTTGAGAGAACAGACTACATGGCCAACATCTGCCAGGACCTTTCAGATGTTCTGCAG
Seq A exon
GTCTTGGAAGAATTTTACAACATATTTGGCCCAGAGCTCAAGGCTGTGACAGGGGACCCCAAGAGAATCGACGATGTCCTTGGCCGGGTAGACAGCTTGGTGGCTCCTATGGAAAGCCTGAGCTTTGATCCATTCAGCATCAGATCCTCCCCATACTGGAAATACGTGATGGAGGACTTCAAGCTTGAAGTTCTG
Seq C2 exon
ATCGATATCGTTAATAAGATCTTTGTGCAGAACCAGGACAACCCGCCGCTATACAAGAACCACCCTCCCGTGGCGGGCGCGATATGCTGGGAGCGATCCCTGTTCTACAGGATCAAGCACACCATCCTGCGCTTCATGGAGGTGGAGGAACTCCTGGACAGCGAGAGGGGCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'9-11,'9-9,10-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.4=100)
A:
PF083857=DHC_N1=FE(21.4=100),PF083857=DHC_N1=PU(4.0=13.6)
C2:
PF083857=DHC_N1=PD(0.1=0.0),PF083857=DHC_N1=FE(26.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCAGGAGGCTAGAAACACT
R:
ACGGGAGGGTGGTTCTTGTAT
Band lengths:
242-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: