GgaEX7009381 @ galGal4
Exon Skipping
Gene
ENSGALG00000008150 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr15:11196207-11196932:-
Coord C1 exon
chr15:11196795-11196932
Coord A exon
chr15:11196639-11196721
Coord C2 exon
chr15:11196207-11196360
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCCCTGCCTGTGTACCCCAGGTA
3' ss Score
9.07
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GTGATTAAGAAGACCCGCTTCCCACACTGGGATGAGGTGCTGGAGTTCGAGCTGGCACAGGATGAGCCAGGGGACAGCATGCTGAGCGTGGAGGTGTGGGACTGGGACATCGTGGGCAAGAATGACTTCCTGGGACAG
Seq A exon
GTAAAGGTCCCTCTGGATGCACCGGGTCCCACGGAGGGCTGGTTCCAGCTCCTGCCCTTCCCCAGCAGCACCAAGGAGCCAGG
Seq C2 exon
CCCTCAGCCAGCACGGCACTGGCTGTCCTGGAGGAGGTGACCTCAGGGGACAGCAGGCAGGACGTGGCCACCAAGCTGGTGAAGGTCTTCCTGGCTCAGGATCTGGCCGTGCCATTCCTGGACTACATCATCACCCGTGAGCTGACCAGAACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008150-'10-13,'10-8,11-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.196 C2=0.123
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(53.6=100)
A:
PF0016825=C2=PD(1.2=3.6)
C2:
PF0061614=RasGAP=PU(6.8=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAGAATGACTTCCTGGG
R:
TCAGCTCACGGGTGATGATGT
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]