MmuEX0038898 @ mm9
Exon Skipping
Gene
ENSMUSG00000029602 | Rasal1
Description
RAS protein activator like 1 (GAP1 like) [Source:MGI Symbol;Acc:MGI:1330842]
Coordinates
chr5:121112193-121113852:+
Coord C1 exon
chr5:121112193-121112324
Coord A exon
chr5:121112928-121113013
Coord C2 exon
chr5:121113735-121113852
Length
86 bp
Sequences
Splice sites
3' ss Seq
GGTCTGTGTGTCTCCTGCAGGTG
3' ss Score
11.92
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACCATCAAGAAGACCCGCTTTCCACACTGGGATGAGGTGTTGGAGCTGCGGGAGGCTCCGGGGACCACGTCCCCGCTGCGAGTGGAACTCTGGGATTGGGACATGGTGGGCAAGAATGACTTCCTGGGTATG
Seq A exon
GTGGAGTTCACCCCACAGACCCTGCAGCAGAAGCCACCTAATGGCTGGTTCCGGCTCCTGCCCTTTCCTAGAGCTGAGGATTCTGG
Seq C2 exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCGGTGCAAGGGCCGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029602_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.050
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(52.4=100)
A:
PF0016825=C2=PD(1.2=3.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTGGGATGAGGTGTTGGA
R:
TGGTAGTACTGGGAAGGCAGG
Band lengths:
181-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: