RnoEX0074210 @ rn6
Exon Skipping
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41432336-41433897:-
Coord C1 exon
chr12:41433766-41433897
Coord A exon
chr12:41433058-41433143
Coord C2 exon
chr12:41432336-41432453
Length
86 bp
Sequences
Splice sites
3' ss Seq
GGTCTGTGTGTCTCCTGCAGGTG
3' ss Score
11.92
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACCATCAAGAAGACCCGATTCCCACATTGGGATGAGGTGCTGGAACTACGAGAGGCTCCGGGAACCACATCCCCGCTGCGAGTGGAACTCTGGGATTGGGACATGGTGGGCAAAAATGACTTCCTGGGCATG
Seq A exon
GTGGAATTCACCCCACAGACCCTCCAGCAGAAGCCACCCAATGGCTGGTTCCGTCTCCTGCCTTTTCCTAGAGCTGAGGATTCTGG
Seq C2 exon
GGGGAGCCTGGGTGCCCTGCGGCTGAAGGTGCGCCTCACTGAGGACCGGGTCCTGCCTTCCCAGTACTACCAGCCTCTCATGGAACTGCTTCTGGAGTCCGTGCAAGGGCCAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.103 C2=0.050
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(52.4=100)
A:
PF0016825=C2=PD(1.2=3.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGCTGGAACTACGAGAGG
R:
TGGTAGTACTGGGAAGGCAGG
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]