BtaEX0029752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016739 | RASAL1
Description
RAS protein activator like 1 (GAP1 like) [Source:HGNC Symbol;Acc:HGNC:9873]
Coordinates
chr17:63409820-63413334:-
Coord C1 exon
chr17:63413203-63413334
Coord A exon
chr17:63410493-63410581
Coord C2 exon
chr17:63409820-63409937
Length
89 bp
Sequences
Splice sites
3' ss Seq
GCCTGTGTGTTGCCCCACAGGTG
3' ss Score
12.45
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
ACCATCAAGAAGACTCGCTTCCCACACTGGGATGAGGTGCTGGAGCTGCGGGAGATGCCAGGTTCCCCATCCCCTCTGCGAGTGGAACTCTGGGACTGGGACATGGTTGGCAAGAATGACTTTTTGGGAATG
Seq A exon
GTGGAGTTCCCCCCACAGGTCCTGCAACACAACCCGCCCAATGGCTGGTTCCGCCTCCTGCCCTTTCCCAGAGCAGAGGAGGATTCTGG
Seq C2 exon
CGGGAGCTTGGGTGCTCTGAGGCTGAAGGTGCGCCTGACCGAGGACTCTGTCCTGCCCTCACGGTACTACCAGCCACTTAGGGAGCTGCTCATGGAGTCGGTGCTGGGGCCAGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016739_MULTIEX2-3/7=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016825=C2=FE(52.4=100)
A:
PF0016825=C2=PD(1.2=3.3)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCCAGGTTCCCCATCC
R:
GACTCCATGAGCAGCTCCCTA
Band lengths:
180-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development