GgaEX7009566 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10086585-10087311:+
Coord C1 exon
chr18:10086585-10086676
Coord A exon
chr18:10086854-10087015
Coord C2 exon
chr18:10087147-10087311
Length
162 bp
Sequences
Splice sites
3' ss Seq
GAGGGTCCCTGTGTTTGCAGGGA
3' ss Score
7.03
5' ss Seq
GCTGTAAGC
5' ss Score
4.47
Exon sequences
Seq C1 exon
CCATGCACCAGCGGGTCAGTGCCACCTTCCTGCCCACTGCCATCAAGTTCCACTACCTCTTCAACCTCCGGGACCTCTCCAACATATTCCAG
Seq A exon
GGACTGCTGTTCTCCACCCCCGAGTGCCTGCGGAGCCCCGTGGACCTGGTGAGGCTCTGGATGCACGAAGCCGAGCGGGTCTACGGGGACAAGCTTGTTGATGACAAGGATCAGAAAAGCTTTGGGAAAATGCTAACTGACACCTGCAAGAAATTCTTTGCT
Seq C2 exon
GACCTCAACGAAGAGACGGTGTTTGCCAAGCCCAACATCTACTGCCACTTCGCCGAGGGCATCAGGGAGCCCAAGTACCTGCCAGTGCCGAGCTGGCCATCACTCAACAAGCTGCTGGGAGAGGCCTTGGACAGCTACAATGAAGTCAATGCGGCAATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'56-61,'56-60,57-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(11.0=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(3.4=16.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGTGCCACCTTCCTGC
R:
AGGTTCATTGCCGCATTGACT
Band lengths:
242-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]