MmuEX6091630 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118066891-118069006:-
Coord C1 exon
chr11:118068915-118069006
Coord A exon
chr11:118067511-118067672
Coord C2 exon
chr11:118066891-118067055
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGTTGGGGGGCGGGGGCAGGGC
3' ss Score
-0.81
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
CCTTGCACCAGAAAGTCTCAGCGACGTTCCTTCCCACAGCCATTAAGTTTCATTACATCTTCAACCTCAGGGACCTCTCCAATATATTCCAG
Seq A exon
GGCATCTTATTCTCCACAGCAGAGATTCTGAAAACCCCGCTGGACCTCGTCCGCCTTTGGCTGCATGAGGCTGAGCGAGTGTATGGGGACAAGATGGTTGATGAGAAAGACCAGGAGACGCTGCACAGGGTCACCATAGCATCTGTCAAGAAATTCTTTGAC
Seq C2 exon
GATCTTGGGGAGGAGAATCTCTTTGCCAAACCCAACATCTTCTGCCACTTTACGCAAGGAATCGGTGACCCCAAGTACTTCCCCGTCACGGATGTGGCACAACTGAACAAGCTGCTGAAGGACGTCCTGGACAGTTACAACGAGGTTAACGCAGTCATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'67-70,'67-69,68-70=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(11.0=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(3.4=16.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCACCAGAAAGTCTCAGCG
R:
TGACTGCGTTAACCTCGTTGT
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types