RnoEX6050807 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107076753-107078537:-
Coord C1 exon
chr10:107078446-107078537
Coord A exon
chr10:107077308-107077469
Coord C2 exon
chr10:107076753-107076917
Length
162 bp
Sequences
Splice sites
3' ss Seq
GCATTGTGTGTCTGGGGCAGGGT
3' ss Score
6.92
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CCTTGCACCAGAAAGTCGCTGCAACGTTCCTTCCCACGGCCATTAAGTTTCATTACATCTTCAACCTCAGGGACCTCTCCAACATATTCCAG
Seq A exon
GGTATCTTGTTCTCCACGTTAGAGATTCTGAGAACCCCGCTGGACATCGTCCGCCTCTGGCTGCACGAGGCTGAGCGGGTGTACGGGGACAAGATGGTGGATGAGAAAGACCAGGAGACGTTGCGCAGGGTCACCATGGCATCCACCAAGAAATTCTTCGAT
Seq C2 exon
GACCTCGGGGAAGAGCACCTCTTCGCCAAACCCAACATCTTCTGCCACTTTACACAAGGGATCGGGGACCCCAAGTACTTCCCCGTCACGGACGTGGCGCACCTGAACAAGCTTCTCAAAGACGTCCTGGACAGTTACAACGAAGTCAACGCGGTCATGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028-'57-63,'57-62,58-63=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127752=AAA_7=FE(11.0=100)
A:
PF127752=AAA_7=PD(8.1=40.7)
C2:
PF127802=AAA_8=PU(3.4=16.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAAGTCGCTGCAACGTTC
R:
GGTTCATGACCGCGTTGACTT
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]