GgaEX7009578 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10079271-10080322:+
Coord C1 exon
chr18:10079271-10079397
Coord A exon
chr18:10079579-10079731
Coord C2 exon
chr18:10080197-10080322
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCTGCTGCTGCTGCCCACAGGTG
3' ss Score
11
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GCTGGCGGTCTGTGAGAAGGCTCTGGCCGAATACCTGGAGACAAAGCGACTGGCCTTCCCCAGGTTCTACTTCGTTTCCTCCGCGGATCTGCTTGACATTCTATCTAATGGGAACGAGCCAACTGAG
Seq A exon
GTGTCCCGTCACCTCTCGAAGCTGTTTGACAGTCTCGCTAAGCTGAAGTTCAAGATGAGCCCGGACAAAAAGCCGCTGAAGACGGCCCTGGGGATGTTCAGCAAAGAGGAGGAGTTTGTGCCGCTGAGCGCAGAGTGCGATCTGTCCGGGCAG
Seq C2 exon
GTGGAGGTGTGGCTGAACCGCGTGCTGGACAGCATGCGCTCCACGCTGCGGCACCTGATCCCCGAGGCCGTGGCCAGCTATGAGGACAAGCCACGGGAGCAGTGGGTGTTTGACTACCCGGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'33-33,'33-32,34-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCTGTGAGAAGGCTCTGG
R:
CGGGTAGTCAAACACCCACTG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]