MmuEX1008682 @ mm10
Exon Skipping
Gene
ENSMUSG00000033987 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:118091394-118094220:-
Coord C1 exon
chr11:118094094-118094220
Coord A exon
chr11:118093519-118093671
Coord C2 exon
chr11:118091394-118091519
Length
153 bp
Sequences
Splice sites
3' ss Seq
CTCTAGGGTCCTTCCCCCAGGTG
3' ss Score
8.43
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTTGGCTGTGTGTGAAAAGGCGCTGGCTGAATATCTGGAGACCAAGAGGCTGGCGTTCCCACGGTTCTATTTTGTCTCCTCCGCCGATCTGCTTGATATTCTCTCCAACGGAAACGACCCCGTGGAG
Seq A exon
GTGAGCCGCCACCTGTCCAAGCTCTTCGACAGCCTGTGTAAGCTCAAGTTCCGCCTTGACGCTAGTGGAAAGCCACTCAAGTTTGGGCTGGGGATGTACAGCAAGGAGGACGAGTTTGTGGACTTTGATAAGGAGTGTGACCTCTCCGGGCAG
Seq C2 exon
GTGGAAGTGTGGCTGAATCGCGTGCTGGACCGAATGCGCGCCACGTTGCGCCACGAAATTCCAGAAGCCGTGGTGACTTACGAGGAGAAACCGAGGGAACAATGGATCTTTGACTACCCGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987-'37-40,'37-38,39-40
Average complexity
S
Mappability confidence:
100%=80=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(10.1=100)
A:
PF083938=DHC_N2=FE(12.1=100)
C2:
PF083938=DHC_N2=PD(6.5=64.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGCTGTGTGTGAAAAGGC
R:
GGCCGGGTAGTCAAAGATCCA
Band lengths:
250-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types